Introduces principles and application of fluid and mass transport processes in cell, tissue and organ systems. Topics include intro to physiological fluid mechanics in the circulation and tissue, fundamentals of mass transport in biological systems, effects of mass transport and biochemical interactions at the cell and tissue scales and fluid and mass transport in organs. Prerequisites: APMA 2130 or MATH 3250, or APMA 2501 - Differential Equations & Linear Algebra, and BME 2101, and BME 2104, or instructor permission.

Provides students with the skills necessary to engage in meaningful engineering design, and focuses on the latter stages of the engineering design process - detailed design, prototyping, and evaluation. Students develop skills in computer assisted design, embedded controls, prototyping, analysis and teamwork. A major focus of the class is the execution of a design project. Prerequisites: PHYS 1425, and BME major or minor. Recommended Corequisite: PHYS 2415 or ECE 2200.

Presents analytical tools used to model signals & linear systems. BME examples include multicompartment modeling of drug delivery, modeling of dynamic biomechanical systems & electrical circuit models of excitable cells. Topics: signals & systems, convolution, continuous time Fourier transforms, electrical circuits & applications of linear system theory. Prerequisite: PHYS 2415 & APMA 2130, & CS 1110 or equivalent

Introduces principles of continuum mechanics of biological tissues & systems. 1) Review results used in biomechanics field, 2) properties of living tissue; 3) mechanical basis & effects of pathology & trauma: 4) intro to mechanotransduction, circulatory transport, growth & remodeling & tissue-engineered materials; 5) low Reynolds number flows in vivo & microsystems. Prerequisites: APMA 2120 or MATH 2310 or MATH 2315 and BME Major or Minor

Introduces techniques for constructing predictive or analytical engineering models for biological processes. Teaches modeling approaches using example problems in transport, mechanics, bioelectricity, molecular dynamics, tissue assembly & imaging. Problem sets include 1) linear systems and filtering 2) compartmental modeling 3) numerical techniques 4) finite element / finite difference models and 5) computational automata models. Prereq: CS 1110 or CS 1111 or CS 1112. Co-requisites: APMA 2130 or MATH 3250 or APMA 2501- Differential Equations & Linear Algebra or instructor permission.

Introduces the fundamental principles of tissue engineering. Topics: tissue organization and dynamics, cell and tissue characterization, cell-matrix interactions, transport processes in engineered tissues, biomaterials and biological interfaces, stem cells and interacting cell fate processes and tissue engineering methods. Examples of approaches for regeneration of cartilage, bone, ligament, tendons, skin and liver are presented. Prerequisites: APMA 2130 or MATH 3250 or APMA 2501 - Differential Equations & Linear Algebra, and BME 2101, and BME 2104, or instructor permission.

Introduces the physiology of the kidney, salt and water balance, gastrointestinal system, endocrine system, and central nervous system, with reference to diseases and their pathophysiology. Prerequisite: (CHEM 1410 or CHEM 1610 or CHEM 1810) AND (PHYS 1425 or PHYS 1420 or PHYS 1710) AND BME 2101, or instructor permission.

Second part of a year-long course integrating concepts and skills from prior courses to formulate and solve problems in biomedical systems, including experimental design, performance and analysis. Prerequisite: 3rd Year standing in BME major, or instructor permission

Second half of a year-long design project required for BME majors. Students select, formulate, & solve a design problem related to a device or a system. Projects use conceptual design, skills obtained in the integrated lab & substantial literature and patent reviews. Projects are sponsored by faculty, physicians and/or companies. Students may work on their own with outside team members when appropriate or with other students in integrative teams. Prerequisite: 4th year standing in the Biomedical Engineering major or instructor permission.

Intro to fundamentals of cell structure and function, emphasizing the techniques and technologies available for the study of cell biology. Content includes cell structure and function; energy flow in cells; information flow in cells focuses on modern molecular biology and genetic engineering, and includes DNA replication, the cell cycle, gene expression, gene regulation, and protein synthesis. Prerequisite: CHEM 1410 or CHEM 1610 or CHEM 1810 or instructor permission.

Applies engineering science, design methods, and system analysis to developing areas and current problems in biomedical engineering. Topics vary by semester. Recent topics include Medical Imaging Systems Theory, BME Advanced Design, BME Electronics Lab, and Systems Biology Modeling and Experimentation. Prerequisite: third- or fourth-year standing or instructor permission.

You will learn how excitable tissue, nerves and muscle, and the cardiovascular and respiratory systems function. You will develop an understanding of mechanisms, with an introduction to structure, an emphasis on quantitative analysis, and integration of hormonal and neural regulation and control. Prerequisites: (PHYS 1425 or PHYS 1420 or PHYS 1710) AND (APMA 1110 or MATH 1320) AND (CHEM 1410 or CHEM 1610 or CHEM 1810) AND BME Major or Minor

Project-driven course focusing on biomedical product design with emphasis on marketability, innovation, entrepreneurship and business. Topics include design fundamentals, problem/needs identification, delineation of realistic constraints and product specifications, intellectual property, market analysis, entrepreneurship, specific advanced design, business plan development, venture funding, and medical product testing methods. Pre-requisite: BME 2000 or instructor permission.

This course introduces techniques for constructing mathematical and computational models of biological processes and utilizing experimental data to validate those models at many levels of organizational scale -- from genome to whole-tissue. Prerequisites: APMA 2130 or MATH 3250 or APMA 2501 - Differential Equations & Linear Algebra, and APMA 3110 or APMA 3100 or MATH 3100, and BME 2101, and BME 2104, and BME 2315 and BME major or minors

This course will provide students with a quantitative framework for identifying and addressing important biological questions at the molecular, cell, and tissue levels. The course will focus on the interplay between methods and logic, with an emphasis on the themes that emerge repeatedly in quantitative experiments.

"We will explore engineering methods to use ""microbes as tools"" for human wellbeing, to understand and combat ""microbes as enemies"" in infectious disease, and to characterize and manipulate ""microbes as partners"" in human health and wellbeing. We will learn how facets of BME are used to test hypotheses of human/microbe relationships and to design strategies to understand and treat disease and improve human wellbeing. Prerequisites: BME 2000 AND (BME 2101 OR BME 2102) AND BME 2104 AND BME 2315"

In-depth study of a biomedical engineering area by an individual student in close collaboration with a departmental faculty member. Requires advanced analysis of a specialized topic in biomedical engineering that is not covered by current offerings. Requires faculty contact time and assignments comparable to regular course offerings. Prerequisite: instructor permission.

A year-long research project in biomedical engineering conducted in consultation with a department faculty advisor; usually related to ongoing faculty research. Includes the design, execution, and analysis of experimental laboratory work and computational or theoretical computer analysis of a problem. Requires a comprehensive report of the results. Prerequisite: third- or fourth-year standing, and instructor permission.

Students learn to motivate research, design experiments, analyze/display data, present results for their own research. Receive training in professional skills, including project leadership and management, best practices for collaborative research, and developing resilience. Prereq: BME 6001-6004, or permission by instructor

Students learn principles and techniques to computationally approach biomedical research and practice. Students obtain hands-on experience using computational thinking/strategy and build computational models to describe biomedical phenomena or analyze biomedical data. Prereq: BME 6001-6004 and ability in MATLAB or Python.

A project-based grounding in biomedical product design, with emphasis on clinical immersion and topics including design fundamentals, problem/needs identification, delineation of realistic constraints and product specifications, intellectual property, market analysis, entrepreneurship, specific advanced design topics, business plan development, venture funding, and medical product testing methods. Prerequisite: Instructor Permission

A professional development course for biomedical engineering graduate students.

In a team, develop, prototype, and conduct verification and validation tests on engineering solutions to clinical challenges, demonstrating concept viability. Formal Design Control, Life Cycle, Risk Analysis, Project Management and Intellectual Property Strategies are introduced. Using Product Development Protocols, prepare a regulatory and implementation pathway analysis for commercialization into clinical practice. Prerequisite: BME 6550 Special Topics: Clinical Technology Continuum of Care

Introduces techniques for constructing mathematical and computational models of biological processes at many levels of organizational scale from genome to whole-tissue. Topics include choice of techniques, quantitative characterization of biological properties, assumptions and model simplification, parameter estimation and sensitivity analysis, model verification and validation and integration of computational modeling w/experimental approaches.Prerequisites: BME 6101, and BME 2104 or BME 7806 (or equivalent).

Applies engineering science, design methods, and system analysis to developing areas and current problems in biomedical engineering. Topics vary by semester.

The course will cover human genetics and genomics, including the human/mammalian genome variation, determination of genomic variation on phenotype and disease risk, mapping and characterizing genetic variants on phenotype, determining the putative impact of genetic variants on gene expression (transcriptomics, epigenomics), the promise and implications of genome science on precision medicine and the ethical, legal & social implications.Pre-requisite: BIOL 3010 or BIOL 4210 or instructor consent.

Provides students with a quantitative framework for identifying and addressing important biological questions at the molecular, cell, and tissue levels. Focuses on the interplay between methods and logic, with an emphasis on the themes that emerge repeatedly in quantitative experiments. Prerequisites: BME 6101 (or equivalent), SEAS graduate student status, or instructor permission.

For master's students.

FOR GRAD STUDENTS ONLY. A research project in biomedical engineering conducted in consultation with a faculty advisor. Includes the design, execution, and analysis of experimental laboratory work and computational or theoretical computer analysis of a problem. Fulfills the project requirement for the Biomedical Engineering Masters of Engineering degree. Prereqs: Instructor Permission Required.

Master's Research

Formal record of student commitment to doctoral research under the guidance of a faculty advisor. May be repeated as necessary.